PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010101942.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 1508aa    MW: 169200 Da    PI: 8.6449
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010101942.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.0002213931418123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                      y C    C++sFs+k +L+ H ++ +
  XP_010101942.1 1393 YMCDieGCTMSFSTKQELVLHKKNiC 1418
                      899999***************99866 PP

2zf-C2H213.10.0002814181440323
                      ET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                      Cp   Cgk F ++ +L++H r+H
  XP_010101942.1 1418 CPvkGCGKKFFSHKYLVQHRRVH 1440
                      9999*****************99 PP

3zf-C2H211.80.0007414761502123
                      EEET..TTTEEESSHHHHHHHHHH..T CS
         zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                      y+C    Cg++F+  s++ rH r+  H
  XP_010101942.1 1476 YVCAepGCGQTFRFVSDFSRHKRKtgH 1502
                      899999****************99666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005451.5E-142465IPR003349JmjN domain
PROSITE profilePS5118313.552566IPR003349JmjN domain
PfamPF023757.8E-142659IPR003349JmjN domain
PROSITE profilePS5118433.514186365IPR003347JmjC domain
SMARTSM005582.6E-50196365IPR003347JmjC domain
SuperFamilySSF511973.3E-26210379No hitNo description
PfamPF023732.0E-36229348IPR003347JmjC domain
SMARTSM003551013931415IPR015880Zinc finger, C2H2-like
SMARTSM003550.004514161440IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.21E-614161452No hitNo description
PROSITE profilePS5015712.44514161445IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-514171444IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028014181440IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-714451470IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.001714461470IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.63714461475IPR007087Zinc finger, C2H2
PROSITE patternPS00028014481470IPR007087Zinc finger, C2H2
SuperFamilySSF576672.68E-914561500No hitNo description
Gene3DG3DSA:3.30.160.602.3E-914711499IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.01114761507IPR007087Zinc finger, C2H2
SMARTSM003550.6214761502IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028014781502IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0032259Biological Processmethylation
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0035067Biological Processnegative regulation of histone acetylation
GO:0040010Biological Processpositive regulation of growth rate
GO:0045815Biological Processpositive regulation of gene expression, epigenetic
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0008168Molecular Functionmethyltransferase activity
GO:0046872Molecular Functionmetal ion binding
GO:0071558Molecular Functionhistone demethylase activity (H3-K27 specific)
Sequence ? help Back to Top
Protein Sequence    Length: 1508 aa     Download sequence    Send to blast
MAASGLTSEQ ASPEVFSWLK TLPQAPEYHP TLAEFQDPIS YIFKIEKEAS EYGICKIVPP  60
VPPSAKKTVI ANLNKSLAAR NGGFDASNPK NPPTFTTRQQ QIGFCPRKPR PVQRPVWQSG  120
ENYTFQQFEA KAKGFERSFF KRCAKKGALS PLEIETLYWK ATVDKPFSVE YANDMPGSAF  180
VPVSAKRSRE AGESATLGET AWNMRAVSRA KGSLLRFMKE EIPGVTSPMV YVAMMFSWFA  240
WHVEDHDLHS LNYLHMGAGK TWYGVPREAA VAFEEVVRVH GYGGEINPLV TFSILGEKTT  300
VMSPEVFVRA GVPCCRLVQN PGEFVVTFPR AYHTGFSHGF NCGEAANIAT PEWLRVAKDA  360
AIRRASINYP PMVSHFQLLY DLALALCSRI PESVGAEPRS SRLKDKKKGE GETVVKELFV  420
QNVLQNNDLL HVLGNGSPVV LLPRSSSDIS VCSKLRVGSH LRLNSSSPLA SCNSREEMKS  480
SRSLISDDLM IDRKQEVDQV KDFYSVKGKL ASLCDRSWVP SLRGNKITCA SNSKTSNMNV  540
EGESTVDNDG LSDQRLFSCV TCGILSFACV AIIQPREPAA RYLMSADCSF FNDWVVNAGV  600
ASNVFPVSNR YQTASKENTY TGWTDNSEPL ALCENPGQSV NFQAQMADQK NEIVSNTETQ  660
KAPSALGLLA LNYGNSSDSE EDQVQEDVSV DGNETNVSNC SLESKYRCES SSPSLRNCQG  720
DTVHGRSLVE LDSGDDFASQ NADSYMENGH NKDNTKYDSH QNFDCPVSFR TNNAAPAQSN  780
GLVPKFGDGM KASRTCSPDT YDAEATRFCK AIAPTKNENM PFVPICDEDS CRMHVFCLEH  840
AVEVEQQLRQ VGCVDIVLLC HPDYPKIETE AKAMAEELGI SHLWNDIEFR DATKDDENMI  900
QATLDSEEAI PKNGDWAVKL GINLFYSANL SRSPLYSKQM PYNSVIYDAF GRSSPASSSA  960
RSDGFERRPA KQKKVVAGKW CGKVWMSSQV HPFLAKKDPE EEEQERSFHT WATPDEKVER  1020
KYDGTRKSSN TMIAKKYVRK RKMTVESSST KKAKRVKRED AVSDNSMDDS HEHHRRSLRS  1080
KQAVSIGGGS AKKAKHTEIE GAASDDSLHD NSHRQHRRTF KSKQATYVES DGIVSDDSLE  1140
VDFRYQHKKI LRSKPSKHAG REDVVSDDSL DSDSHQLRGR VCRIKQAKHT EEEDVVSDDS  1200
LDSDSQLHRS IPRSKQAKYN EREDSSSDYF HRNNLQKLHR RISKSKPAKS IGREDEDLDE  1260
PLEDNARKSD ERILRSKRTK SALQQKMKQE TPHHVKQSTA RPVKQENRKL KQQTPRLRNS  1320
QCEQNILGSC AEEELEGGPS TRLRKRNPKP QKLTGAKRKE QQQPSRKKVK NAVVVKAQAG  1380
HNDAKSKDEE GEYMCDIEGC TMSFSTKQEL VLHKKNICPV KGCGKKFFSH KYLVQHRRVH  1440
MDDRPLRCPW KGCKMTFKWA WARTEHIRVH TGARPYVCAE PGCGQTFRFV SDFSRHKRKT  1500
GHSVKKAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4igo_A2e-512134912360Os05g0196500 protein
4igp_A2e-512134912360Os05g0196500 protein
4igq_A2e-512134912360Os05g0196500 protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
110351041KYVRKRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00608ChIP-seqTransfer from AT3G48430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010101942.10.0Lysine-specific demethylase REF6
SwissprotQ9STM30.0REF6_ARATH; Lysine-specific demethylase REF6
TrEMBLW9S5V70.0W9S5V7_9R
STRINGPOPTR_0015s10040.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56483250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.10.0relative of early flowering 6